Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PDXDC1, pyridoxal-dependent decarboxylase domain containing 1
Sequence ID:NM_015027
Entrez Gene ID:23042
Ensembl ID:ENSG00000179889

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16p13.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 15120499 - 15131544

 Exon Info From UCSC:
NM_015027

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5270048Full LengthBC036520pyridoxal-dependent decarboxylase domain containing 1
5295351Full LengthBC045554pyridoxal-dependent decarboxylase domain containing 1
30347972Full LengthBC060871pyridoxal-dependent decarboxylase domain containing 1
3939623IncompleteBC025366pyridoxal-dependent decarboxylase domain containing 1
5114403IncompleteBC042104pyridoxal-dependent decarboxylase domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055842  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015027 NP_055842 Q6P996 Pyridoxal_deC

Related Sequences

 
mRNAGenPeptSwissProt
BC025366 AAH25366 Q6P996
BC033748 AAH33748 Q6P996
BC036520 AAH36520 Q6P996
BC042104 AAH42104 Q6P996
BC045554 AAH45554 Q86XE2
BC060871 AAH60871 Q6P996
AY203955 AAP34478 Q6XYB5
DQ111782 AAZ14099 Q6P996
D87438 BAA19780 Q6P996
AK295168 BAG58179 B4DHL7
AK299111 BAG61167 B4DR55
AK299799 BAG61675 B4DSL3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PDXDC1 NP_055842 M.musculus Pdxdc1 94184 Gene Info NP_444411 89
R.norvegicus Pdxdc1 304721   NP_001128433 87
D.melanogaster CG1486 33108   NP_608450 32
A.gambiae AgaP_AGAP000861 1277374   XP_316831 32
C.elegans C14H10.3 181232   NP_001123108 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)