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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPS15A, ribosomal protein S15a
Sequence ID:NM_001019
NM_001030009
Entrez Gene ID:6210
Ensembl ID:ENSG00000134419

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16p

Chromosomal Position (from UCSC)

Chromosomal Position:16: 18794289 - 18800441

 Exon Info From UCSC:
NM_001019
NM_001030009

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2967511Full LengthBC001697ribosomal protein S15a
3839617Full LengthBC105273ribosomal protein S15a
5580542Full LengthBC030569ribosomal protein S15a
5736078Full LengthBC046113ribosomal protein S15a
6649512Full LengthBC105292ribosomal protein S15a
4844578IncompleteBC032115ribosomal protein S15a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001025180  NP_001010  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001019 NP_001010 P62244 Ribosomal_S8
NM_001030009 NP_001025180 P62244 Ribosomal_S8

Related Sequences

 
mRNAGenPeptSwissProt
BC001697 AAH01697 P62244
BC030569 AAH30569 P62244
BC046113 AAH46113 P62244
BC105273 AAI05274 P62244
BC105292 AAI05293 P62244
AY208299 AAO48936 P62244
JF432790 ADZ16007  
AB062400 BAB93487 P62244
AK291988 BAF84677 A8K7H3
AK311976 BAG34915 B2R4W8
X84407 CAA59127 P62244

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS15A NP_001010 M.musculus Rps15a 267019 Gene Info NP_733769 100
R.norvegicus Rps15a 117053   NP_446434 100
D.melanogaster RpS15Aa 44150   NP_727693 88
D.melanogaster RpS15Ab 36142   NP_610616 88
C.elegans rps-22 175338   NP_497481 86
A.gambiae AgaP_AGAP009572 1278933   XP_318584 83
A.gambiae AgaP_AGAP000541 3289708   XP_565801 83
A.thaliana AT2G39590 818544   NP_181491 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)