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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VLDLR, very low density lipoprotein receptor
Sequence ID:NM_001018056
NM_003383
RefSeqGene ID:NG_012741
Entrez Gene ID:7436
Ensembl ID:ENSG00000147852

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CEREBELLAR HYPOPLASIA AND MENTAL RETARDATION WITH OR WITHOUTQUADRUPEDAL LOCOMOTION 1 

Cytogenetic Location (from UniGene)

Cytogenetic Location:9p24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 2621854 - 2654485

 Exon Info From UCSC:
NM_001018056
NM_003383

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020552Full LengthBC136562very low density lipoprotein receptor
9052765Full LengthBC144245very low density lipoprotein receptor
40148037Full LengthBC142653very low density lipoprotein receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001018066  NP_003374  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001018056 NP_001018066 Q5VVF5 EGF
Ldl_recept_a
Ldl_recept_b
EGF_CA
NM_003383 NP_003374 P98155 EGF
Ldl_recept_a
Ldl_recept_b
EGF_CA

Related Sequences

 
mRNAGenPeptSwissProt
L20470 AAA53684 P98155
L22431 AAA61344 P98155
S73849 AAB31735 P98155
BC136562 AAI36563 P98155
BC142653 AAI42654 Q5VVF5
BC144245 AAI44246 Q5VVF5
D16493 BAA03945 P98155
D16494 BAA03946 P98155
Q5VVF5
AK092381 BAC03874 Q8NAN7
AB208822 BAD92059 Q59HD7
AK289527 BAF82216 A8K0G2
AK095744 BAG53118 B3KTK6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VLDLR NP_003374 R.norvegicus Vldlr 25696   NP_037287 96
M.musculus Vldlr 22359 Gene Info NP_038731 96
D.melanogaster LpR2 43105   NP_001097928 45
D.melanogaster LpR1 2768687   NP_001163734 45
A.gambiae AgaP_AGAP002186 1269366   XP_307995 44
C.elegans T13C2.6 174116   NP_872023 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta