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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IFNA1, Interferon, alpha 1
Sequence ID:NM_024013
Entrez Gene ID:3439
Ensembl ID:ENSG00000197919

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9p22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 21440476 - 21441099

NM_024013 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
18762144043921441314

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8327470Full LengthBC112002interferon, alpha 1
8327768Full LengthBC112300interferon, alpha 1
8327770Full LengthBC112302interferon, alpha 1
30915263Full LengthBC074929interferon, alpha 1
30915487Full LengthBC074928interferon, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_076918  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024013 NP_076918 P01562 Interferon

Related Sequences

 
mRNAGenPeptSwissProt
BC074928 AAH74928 P01562
BC074929 AAH74929 P01562
BC112002 AAI12003 P01562
BC112300 AAI12301 P01562
BC112302 AAI12303 P01562
HQ258738 ADR83489  
V00537 CAA23798 P01562
V00538 CAA23799 P01562

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IFNA1 NP_076918 H.sapiens IFNA13 3447 Gene Info NP_008831 99
M.musculus Ifna9 15972 Gene Info NP_034637 65
M.musculus Ifna6 15969 Gene Info NP_996754 65
M.musculus Ifna13 230396 Gene Info NP_796321 65
M.musculus Ifna1 15962 Gene Info NP_034632 63
M.musculus Ifna5 15968 Gene Info NP_034635 63
M.musculus Gm13280 230398 Gene Info NP_996750 63
M.musculus Gm12597 242517 Gene Info NP_996753 62
M.musculus Ifna12 242519 Gene Info NP_796335 62
M.musculus Ifna7 15970 Gene Info NP_032360 61
M.musculus Ifna11 15964 Gene Info NP_032359 60
M.musculus Ifnab 15974 Gene Info NP_032362 60
M.musculus Ifna14 404549 Gene Info NP_996858 60
M.musculus Ifna2 15965 Gene Info NP_034633 59
R.norvegicus Ifna5 690894   XP_001076062 58
R.norvegicus LOC680208 680208   XP_001056120 58
R.norvegicus RGD1561246 502959   XP_578464 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta