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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEC31A, SEC31 homolog A (S. cerevisiae)
Sequence ID:NM_001077206
NM_001077207
NM_001077208
NM_001191049
NM_014933
NM_016211
RefSeqGene ID:NG_029569
Entrez Gene ID:22872
Ensembl ID:ENSG00000138674

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q21.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 83739814 - 83812289

 Exon Info From UCSC:
NM_001077206
NM_001077207
NM_001077208
NM_001191049
NM_014933
NM_016211

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6196402Full LengthBC084583SEC31 homolog A (S. cerevisiae)
9051997Full LengthBC143489SEC31 homolog A (S. cerevisiae)
9051999Full LengthBC143491SEC31 homolog A (S. cerevisiae)
9052000Full LengthBC143492SEC31 homolog A (S. cerevisiae)
40125772Full LengthBC117221SEC31 homolog A (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057295  NP_055748  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001077206 NP_001070674    
NM_001077207 NP_001070675    
NM_001077208 NP_001070676    
NM_001191049 NP_001177978    
NM_014933 NP_055748 O94979 WD40
NM_016211 NP_057295   WD40

Related Sequences

 
mRNAGenPeptSwissProt
AF161393 AAF28953 O94979
AF161452 AAF29012 O94979
AF139184 AAF67836 O94979
BC047883 AAH47883 O94979
BC084583 AAH84583 O94979
BC117221 AAI17222 O94979
BC143489 AAI43490 O94979
BC143491 AAI43492 O94979
BC143492 AAI43493 B7ZL00
AY137583 AAN15221 O94979
AB020712 BAA74928 O94979
AB018358 BAA84923 O94979
AB018359 BAA84924 O94979
AK125897 BAC86336 O94979
AK295810 BAG58628 B4DIW6
AL049463 CAH56418 O94979
CR933696 CAI45995 O94979

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEC31A NP_057295 M.musculus Sec31a 69162 Gene Info NP_081245 92
R.norvegicus Sec31a 93646   NP_148981 90
A.gambiae AgaP_AGAP011551 1271207   XP_309957 42
D.melanogaster sec31 35877   NP_724716 40
N.crassa NCU06738 3879671   XP_963510 35
S.pombe sec31 2541273   NP_595582 31
S.cerevisiae SEC31 851332   NP_010086 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)