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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. RAP1B, RAP1B, member of RAS oncogene family
Sequence ID:NM_001010942
Entrez Gene ID:5908
Ensembl ID:ENSG00000127314

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 69004718 - 69054302

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2900837Full LengthBC000176RAP1B, member of RAS oncogene family
6015817Full LengthBC078173RAP1B, member of RAS oncogene family
30523718Full LengthBC095467RAP1B, member of RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001010942  NP_056461  

Protein Infomation

NM_001010942 NP_001010942 P61224 Ras
NM_001251917 NP_001238846    
NM_001251918 NP_001238847    
NM_001251921 NP_001238850    
NM_001251922 NP_001238851    
NM_015646 NP_056461 P61224 Ras

Related Sequences

BC000176 AAH00176 P61224
BC078173 AAH78173 P61224
BC095467 AAH95467 P61224
AF279894 AAK07551 Q9BXV4
AF493913 AAM12627 P61224
BT020093 AAV38896 P61224
AB062128 BAB93460 P61224
AK312371 BAG35289 P61224
AK298818 BAG60950 B4DQI8
AK301401 BAG62936 B4DW74
AK301428 BAG62956 B4DW94
AK316447 BAH14818 B7ZAY2
AK316543 BAH14914 B7ZB78
AL080212 CAB45777 P61224
X08004 CAB46488 P61224
CR407689 CAG28617 P61224
AM393243 CAL38121  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens RAP1B NP_056461 M.musculus Rap1b 215449 Gene Info NP_077777 100
R.norvegicus Rap1b 171337   NP_599173 99
S.cerevisiae RSR1 853056   NP_011668 60
N.crassa NCU02167 3880678   XP_964526 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta