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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SLC25A38, Solute carrier family 25, member 38
Sequence ID:NM_017875
RefSeqGene ID:NG_016931
Entrez Gene ID:54977
Ensembl ID:ENSG00000144659

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
ANEMIA, SIDEROBLASTIC, PYRIDOXINE-REFRACTORY, AUTOSOMAL RECESSIVEGLRX5

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 39424838 - 39438720

NM_017875 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14703942481439425283
4715923943098539431106
5936773943191339431997
6788573943293139433110
85810263943334339433511
102711933943590039436066
119421243943788839438818

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3918744Full LengthBC013194solute carrier family 25, member 38

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060345  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017875 NP_060345 Q96DW6 Mito_carr

Related Sequences

 
mRNAGenPeptSwissProt
BC013194 AAH13194 Q96DW6
HQ447346 ADQ31832  
AK000558 BAA91253 Q96DW6
CR457242 CAG33523 Q96DW6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC25A38 NP_060345 M.musculus Slc25a38 208638 Gene Info NP_659042 87
R.norvegicus Slc25a38 301067   NP_001025203 84
N.crassa NCU02973 3881523   XP_965360 39
S.cerevisiae YDL119C 851439   NP_010164 38
S.pombe SPAC823.10c 2543361   NP_593837 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)