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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COPS2, COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)
Sequence ID:NM_001143887
NM_004236
Entrez Gene ID:9318
Ensembl ID:ENSG00000166200

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 49419549 - 49447780

 Exon Info From UCSC:
NM_001143887
NM_004236

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4245220Full LengthBC012629COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004227  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001143887 NP_001137359    
NM_004236 NP_004227 P61201 PCI

Related Sequences

 
mRNAGenPeptSwissProt
AF084260 AAC34122 P61201
L40388 AAC41734 P61201
AF120268 AAD30269 P61201
AF100762 AAD43026 P61201
BC012629 AAH12629 P61201
AF212227 AAK26250 P61201
EU446744 ABZ92273  
EU831553 ACE86472  
EU831466 ACE87153  
AB209799 BAD93036 Q59EL2
AK222590 BAD96310 Q53HJ0
AK312643 BAG35527 B2R6N0
AK295598 BAG58487 B4DIH5
CR542063 CAG46860 P61201

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COPS2 NP_004227 M.musculus Cops2 12848 Gene Info NP_034069 100
R.norvegicus Cops2 261736   NP_695209 100
A.gambiae AgaP_AGAP008598 1275451   XP_314698 84
D.melanogaster alien 34225   NP_523517 84
C.elegans csn-2 172278   NP_491740 67
A.thaliana FUS12 817241   NP_565632 61
N.crassa NCU00593 3881875   XP_965733 52
S.pombe csn2 3361420   NP_001018220 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta