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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CPSF6, cleavage and polyadenylation specific factor 6, 68kDa
Sequence ID:NM_007007
Entrez Gene ID:11052
Ensembl ID:ENSG00000111605

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q15Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 69666799 - 69668137

NM_007007 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11706963331669633485
1713806964490869645117
3814846964683069646933
4856306965047669650621
6318046965151169651684
80513096965236969652873
131014256965320769653322
142615796965382369653976
158017696965615269656341
177066156966329169668136

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2958189Full LengthBC005000cleavage and polyadenylation specific factor 6, 68kDa
3506481Full LengthBC000714cleavage and polyadenylation specific factor 6, 68kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_008938  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007007 NP_008938 Q16630 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC000714 AAH00714 Q16630
BC005000 AAH05000 Q16630
DQ892159 ABM83085  
EU176688 ABW03489  
AK223568 BAD97288 Q16630
AK292024 BAF84713 Q16630
AK299928 BAG61761 B4DSU9
X67337 CAA47752 Q16630

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CPSF6 NP_008938 M.musculus Cpsf6 432508 Gene Info NP_001013409 100
R.norvegicus Cpsf6 299811   NP_001100255 100
A.gambiae AgaP_AGAP005062 1274745   XP_313937 55
D.melanogaster CG7185 38937   NP_648206 52
C.elegans D1046.1 177710   NP_501551 40
A.thaliana AT5G55670 835661   NP_200378 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)