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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. DSCR3, Down syndrome critical region gene 3
Sequence ID:NM_006052
RefSeqGene ID:NG_009410
Entrez Gene ID:10311
Ensembl ID:ENSG00000157538

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 38597816 - 38639630

NM_006052 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
122023859572538597926
220323553859995438600106
235625063860052338600673
250725813860467738604751
258226623860566238605742
266328123861076038610909
281329563861279638612939
295731813863953838639762
318332523863976338639832

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6157155Full LengthBC110655Down syndrome critical region gene 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006043  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006052 NP_006043 O14972 Vps26

Related Sequences

 
mRNAGenPeptSwissProt
BC110655 AAI10656 O14972
D87343 BAA23225 O14972
AK312707 BAG35585 O14972
AK299662 BAH13092 B7Z606
AK300024 BAH13197 B7Z6B1
AK303624 BAH14000 A8MY26
AK316460 BAH14831 B7Z6B1
AJ001867 CAA05058 O60768

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DSCR3 NP_006043 M.musculus Dscr3 13185 Gene Info NP_031860 92
R.norvegicus Dscr3 360703   NP_001101786 92
A.gambiae AgaP_AGAP011057 1269437   XP_308079 58
D.melanogaster CG4074 40290   NP_649249 51
A.thaliana AT1G48550 841276   NP_175288 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)