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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SFXN1, Sideroflexin 1
Sequence ID:NM_022754
Entrez Gene ID:94081
Ensembl ID:ENSG00000164466

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Unknown

Chromosomal Position (from UCSC)

Chromosomal Position:5: 174905592 - 174951106

 Exon Info From UCSC:
NM_022754

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3888861Full LengthBC020517sideroflexin 1
6187994Full LengthBC063241sideroflexin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_073591  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022754 NP_073591 Q9H9B4 Mtc

Related Sequences

 
mRNAGenPeptSwissProt
BC020517 AAH20517 Q9H9B4
BC063241 AAH63241 Q9H9B4
AF327346 AAL56007 Q9H9B4
AK022287 BAB14003 Q9H9B4
AK022938 BAB14318 Q9H9B4
AK056915 BAG51825 Q9H9B4
AM393845 CAL38720 Q9H9B4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SFXN1 NP_073591 R.norvegicus Sfxn1 364678   NP_001012213 96
M.musculus Sfxn1 14057 Gene Info NP_081600 95
A.gambiae AgaP_AGAP004519 1274665   XP_313819 63
D.melanogaster CG11739 40552   NP_649460 55
C.elegans sfxn-1.5 181353   NP_509949 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)