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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEC23B, Sec23 homolog B (S. cerevisiae)
Sequence ID:NM_032985
NM_006363
NM_001172746
NM_001172745
NM_032986
RefSeqGene ID:NG_016281
Entrez Gene ID:10483
Ensembl ID:ENSG00000101310

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 18488533 - 18541699

 Exon Info From UCSC:
NM_032985
NM_006363
NM_001172746
NM_001172745
NM_032986

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3460841Full LengthBC005404Sec23 homolog B (S. cerevisiae)
3607346Full LengthBC005032Sec23 homolog B (S. cerevisiae)
30339834Full LengthBC095404Sec23 homolog B (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_116780  NP_006354  NP_116781  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001172745 NP_001166216    
NM_001172746 NP_001166217    
NM_006363 NP_006354 Q15437 Gelsolin
zf-Sec23_Sec24
Sec23_trunk
Sec23_helical
Sec23_BS
NM_032985 NP_116780 Q15437 Gelsolin
zf-Sec23_Sec24
Sec23_trunk
Sec23_helical
Sec23_BS
NM_032986 NP_116781 Q15437 Gelsolin
zf-Sec23_Sec24
Sec23_trunk
Sec23_helical
Sec23_BS

Related Sequences

 
mRNAGenPeptSwissProt
BC005032 AAH05032 Q15437
BC005404 AAH05404 Q15437
BC095404 AAH95404 Q15437
DQ891153 ABM82079  
DQ894332 ABM85258  
AK296270 BAG58980 B4DJW8
AK299171 BAG61217 B4DRA5
AK299513 BAG61466 B4DS04
X97065 CAA65775 Q15437

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEC23B NP_001166216 M.musculus Sec23b 27054 Gene Info NP_062761 97
A.thaliana AT2G21630 816701   NP_179757 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)