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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCFD1, sec1 family domain containing 1
Sequence ID:NM_001257376
NM_016106
NM_182835
NR_047546
NR_047547
NR_047548
Entrez Gene ID:23256
Ensembl ID:ENSG00000092108

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 31091524 - 31205001

 Exon Info From UCSC:
NM_016106
NM_182835

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4420306Full LengthBC017734sec1 family domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057190  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001257376 NP_001244305    
NM_016106 NP_057190 Q8WVM8 Sec1
NM_182835 NP_878255    

Related Sequences

 
mRNAGenPeptSwissProt
AF067205 AAC17907 Q8WVM8
AF092139 AAD40381 Q8WVM8
AF110646 AAD48586 Q8WVM8
AF319958 AAG50273 Q8WVM8
BC017734 AAH17734 Q8WVM8
AF086916 AAP97146 Q8WVM8
AB020724 BAA74940 Q8WVM8
AK222820 BAD96540 Q53GW1
AK290410 BAF83099 Q8WVM8
AK297873 BAH12683 B7Z4U7
AK298622 BAH12830 B7Z594
AK299222 BAH12973 B7Z5N7
AK301406 BAH13474 B7Z738
AK316212 BAH14583 B7Z4U7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCFD1 NP_057190 R.norvegicus Scfd1 54350   NP_062237 97
M.musculus Scfd1 76983 Gene Info NP_084101 97
A.gambiae AgaP_AGAP011358 1270593   XP_309291 61
D.melanogaster Slh 33434   NP_995613 60
C.elegans F43D9.3 185707   NP_001122697 50
N.crassa NCU04252 3877406   XP_961243 41
S.pombe sly1 2539096   NP_588374 40
A.thaliana ATSLY1 816310   NP_179389 40
S.cerevisiae SLY1 851770   NP_010475 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)