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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SPTSSB, Serine palmitoyltransferase, small subunit B
Sequence ID:NM_001040100
Entrez Gene ID:165679
Ensembl ID:ENSG00000196542

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3q26.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 161062579 - 161089748

NM_001040100 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
21564161062580161064142
15651657161077589161077681
16582306161089222161089870

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5207108Full LengthBC065208chromosome 3 open reading frame 57
6737276Full LengthBC107756chromosome 3 open reading frame 57
8991952Full LengthBC126236chromosome 3 open reading frame 57
4799134IncompleteBC037817chromosome 3 open reading frame 57

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001040100 NP_001035189 Q8NFR3  

Related Sequences

 
mRNAGenPeptSwissProt
BC065208 AAH65208 Q8NFR3
BC071875 AAH71875 Q8NFR3
BC107756 AAI07757 Q8NFR3
BC126236 AAI26237 Q6ZWB5
AF458592 AAM49720 Q8NFR3
AK123348 BAC85589 Q6ZWB5
AK312144 BAG35080 Q8NFR3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPTSSB NP_001035189 M.musculus 1110032A04Rik 66183 Gene Info NP_598436 86
R.norvegicus LOC100362555 100362555   XP_002729091 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)