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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL4A5, collagen, type IV, alpha 5
Sequence ID:NM_000495
NM_033380
NM_033381
RefSeqGene ID:NG_011977
Entrez Gene ID:1287
Ensembl ID:ENSG00000188153

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
ALPORT SYNDROME 

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 107936073 - 107940155

 Exon Info From UCSC:
NM_000495
NM_033380
NM_033381

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860442Full LengthBC151846collagen, type IV, alpha 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_203699  NP_000486  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000495 NP_000486 P29400 Collagen
C4
NM_033380 NP_203699   Collagen
C4

Related Sequences

 
mRNAGenPeptSwissProt
M31115 AAA52045 P29400
M90464 AAA52046 P29400
M58526 AAA99480 P29400
S69168 AAC60612 P29400
S59334 AAD13909 P29400
BC035387 AAH35387 Q49AM6
BC151846 AAI51847 A7MBN3
AK294066 BAG57411 B4DFF0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL4A5 NP_000486 M.musculus Col4a5 12830 Gene Info NP_001156627 91
R.norvegicus Col4a5 363457   XP_343779 91
C.elegans let-2 181708   NP_510664 57
A.gambiae AgaP_AGAP009200 1280160   XP_319976 54
C.elegans emb-9 176314   NP_001022662 53
D.melanogaster Cg25C 33727   NP_723046 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta