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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SP100, SP100 nuclear antigen
Sequence ID:NM_001080391
NM_001206701
NM_001206702
NM_001206703
NM_001206704
NM_003113
RefSeqGene ID:NG_029842
Entrez Gene ID:6672
Ensembl ID:ENSG00000067066

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q37.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 231280980 - 231381244

 Exon Info From UCSC:
NM_001080391
NM_003113

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4560914Full LengthBC011562SP100 nuclear antigen

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003104  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001080391 NP_001073860    
NM_001206701 NP_001193630    
NM_001206702 NP_001193631    
NM_001206703 NP_001193632    
NM_001206704 NP_001193633    
NM_003113 NP_003104 P23497 HMG_box
SAND
Sp100

Related Sequences

 
mRNAGenPeptSwissProt
M60618 AAA35537 P23497
AF056322 AAC39790 P23497
U36501 AAC50743 P23497
BC011562 AAH11562 P23497
AF255565 AAK51202 P23497
L79988 AAL77438 P23497
L79987 AAL77439 P23497
L79989 AAL77440 Q8TE33
L79986 AAL77441 P23497
AK160379 BAD18722 Q6ZMK3
AK293373 BAG56886 B4DDX5
AK304205 BAG65081 B4E2B9
CR749288 CAH18143 Q68DS7

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta