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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SELT, selenoprotein T
Sequence ID:NM_016275
Entrez Gene ID:51714
Ensembl ID:ENSG00000198843

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 150321121 - 150346162

NM_016275 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1221150321065150321285
222332150340171150340281
333459150340829150340955
460547150342598150342685
548701150344796150344949
7023488150345445150348231

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3899430Full LengthBC009556selenoprotein T
4093231Full LengthBC009611selenoprotein T
4132578Full LengthBC008411selenoprotein T
4333083Full LengthBC006012selenoprotein T
4796883Full LengthBC026350selenoprotein T
5540243Full LengthBC036738selenoprotein T
5548565Full LengthBC071699selenoprotein T

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016275 NP_057359 P62341  

Related Sequences

 
mRNAGenPeptSwissProt
AF131856 AAD20063 P62341
Q6IAK0
AF195141 AAF13696 P62341
BC006012 AAH06012 P62341
BC008411 AAH08411 P62341
BC009556 AAH09556 P62341
BC009611 AAH09611 P62341
BC026350 AAH26350 P62341
BC036738 AAH36738 P62341
BC071699 AAH71699 P62341
AY358095 AAQ88462 P62341
Q6IAK0
AY358096 AAQ88463 P62341
Q6IAK0
AK075006 BAG52048 Q6IAK0
AK300315 BAG62067 B4DTQ5
CR457154 CAG33435 Q6IAK0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SELT NP_057359 M.musculus 2810407C02Rik 69227 Gene Info NP_001035486 99
R.norvegicus Selt 365802   NP_001014275 99
A.gambiae AgaP_AGAP009202 1280163   XP_319979 42
D.melanogaster CG3887 33725   NP_608897 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)