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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL16A1, Collagen, type XVI, alpha 1
Sequence ID:NM_001856
Entrez Gene ID:1307
Ensembl ID:ENSG00000084636

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35-p34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 32118101 - 32164145

 Exon Info From UCSC:
NM_001856

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100068204Full LengthBC167814collagen, type XVI, alpha 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001856 NP_001847 Q07092  

Related Sequences

 
mRNAGenPeptSwissProt
M92642 AAA58427 Q07092
S57132 AAB25797 Q07092
BC167814 AAI67814 Q07092
AF370368 AAQ15204 Q07092
AB209571 BAD92808 Q07092
X14963 CAA33085 Q07092
X15038 CAA33142 Q07092

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL16A1 NP_001847 M.musculus Col16a1 107581 Gene Info NP_082542 90
R.norvegicus Col16a1 366474   NP_001015033 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)