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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CTCF, CCCTC-binding factor (zinc finger protein)
Sequence ID:NM_001191022
NM_006565
Entrez Gene ID:10664
Ensembl ID:ENSG00000102974

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q21-q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 67596475 - 67673071

 Exon Info From UCSC:
NM_001191022
NM_006565

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3840827Full LengthBC014267CCCTC-binding factor (zinc finger protein)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006556  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001191022 NP_001177951    
NM_006565 NP_006556 P49711 zf-C2H2

Related Sequences

 
mRNAGenPeptSwissProt
U25435 AAB07788 P49711
BC014267 AAH14267 P49711
BT009915 AAP88917 P49711
DQ895834 ABM86760  
EU176369 ABW03820  
AB209793 BAD93030 Q59EL8
AK093395 BAG52706 B3KSE4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CTCF NP_006556 M.musculus Ctcf 13018 Gene Info NP_851839 99
R.norvegicus Ctcf 83726   NP_114012 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta