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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOX6, SRY (sex determining region Y)-box 6
Sequence ID:NM_001145811
NM_001145819
NM_017508
NM_033326
RefSeqGene ID:NG_012881
Entrez Gene ID:55553
Ensembl ID:ENSG00000110693

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 15993323 - 16497918

 Exon Info From UCSC:
NM_001145811
NM_001145819
NM_017508
NM_033326

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5269193Full LengthBC047064SRY (sex determining region Y)-box 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_059978  NP_201583  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145811 NP_001139283    
NM_001145819 NP_001139291    
NM_017508 NP_059978   HMG_box
NM_033326 NP_201583   HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC047064 AAH47064 P35712
AF309034 AAK26115 P35712
X65663 CAA46614 P35712
AL136780 CAB66714 P35712
AM392594 CAL37472 P35712
AM392730 CAL37608  
AM393356 CAL38234  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOX6 NP_201583 M.musculus Sox6 20679 Gene Info NP_001020730 97
R.norvegicus Sox6 293165   NP_001019922 97
D.melanogaster Sox102F 43844   NP_001014695 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)