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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PCDHGC3, Protocadherin gamma subfamily C, 3
Sequence ID:NM_032088
NM_018914
NM_018915
NM_003735
NM_018927
NM_002588
NM_018929
NM_018928
NM_018913
NM_018920
NM_018919
NM_018916
NM_018921
NM_018918
NM_018917
NM_018912
NM_018923
NM_018926
NM_018924
NM_018922
NM_018925
NM_003736
NM_032092
NM_014004
NM_032091
NM_032402
NM_032101
NM_032087
NM_032009
NM_032407
NM_032094
NM_032406
NM_032090
NM_032053
NM_032011
NM_032089
NM_031993
NM_032100
NM_032099
NM_032086
NM_032097
NM_032054
NM_032096
NM_032095
NM_032098
NM_032403
RefSeqGene ID:NG_000012
Entrez Gene ID:5098
Ensembl ID:ENSG00000240184

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 140767730 - 140768153

 Exon Info From UCSC:
NM_032088
NM_018914
NM_018915
NM_003735
NM_018927
NM_002588
NM_018929
NM_018928
NM_018913
NM_018920
NM_018919
NM_018916
NM_018921
NM_018918
NM_018917
NM_018912
NM_018923
NM_018926
NM_018924
NM_018922
NM_018925
NM_003736
NM_032092
NM_014004
NM_032091
NM_032402
NM_032101
NM_032087
NM_032009
NM_032407
NM_032094
NM_032406
NM_032090
NM_032053
NM_032011
NM_032089
NM_031993
NM_032100
NM_032099
NM_032086
NM_032097
NM_032054
NM_032096
NM_032095
NM_032098
NM_032403

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2905509Full LengthBC019299protocadherin gamma subfamily C, 3
4153558Full LengthBC026218protocadherin gamma subfamily C, 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_114382  NP_114481  NP_115265  NP_115267  NP_115782  NP_002579  NP_114475  NP_061743  NP_115268  NP_115778  NP_115266  NP_061740  NP_114398  NP_061735  NP_061746  NP_115271  NP_114479  NP_114476  NP_061745  NP_114442  NP_114443  NP_061739  NP_115783  NP_003726  NP_061736  NP_003727  NP_114480  NP_061748  NP_061750  NP_061738  NP_115272  NP_061744  NP_061751  NP_061749  NP_114478  NP_061741  NP_061747  NP_061742  NP_115270  NP_115269  NP_114400  NP_114477  NP_054723  NP_061752  NP_061737  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002588 NP_002579 Q9UN70 Cadherin
Cadherin_2
NM_003735 NP_003726 O60330 Cadherin
Cadherin_2
NM_003736 NP_003727 Q9UN71 Cadherin
Cadherin_2
NM_014004 NP_054723   Cadherin
Cadherin_2
NM_018912 NP_061735 Q9Y5H4 Cadherin
Cadherin_2
NM_018913 NP_061736 Q9Y5H3 Cadherin
Cadherin_2
NM_018914 NP_061737 Q9Y5H2 Cadherin
Cadherin_2
NM_018915 NP_061738 Q9Y5H1 Cadherin
Cadherin_2
NM_018916 NP_061739 Q9Y5H0 Cadherin
Cadherin_2
NM_018917 NP_061740 Q9Y5G9 Cadherin
Cadherin_2
NM_018918 NP_061741 Q9Y5G8 Cadherin
Cadherin_2
NM_018919 NP_061742 Q9Y5G7 Cadherin
Cadherin_2
NM_018920 NP_061743 Q9Y5G6 Cadherin
Cadherin_2
NM_018921 NP_061744 Q9Y5G4 Cadherin
Cadherin_2
NM_018922 NP_061745 Q9Y5G3 Cadherin
Cadherin_2
NM_018923 NP_061746 Q9Y5G2 Cadherin
Cadherin_2
NM_018924 NP_061747 Q9Y5G1 Cadherin
Cadherin_2
NM_018925 NP_061748 Q9Y5G0 Cadherin
Cadherin_2
NM_018926 NP_061749 Q9Y5F9 Cadherin
Cadherin_2
NM_018927 NP_061750 Q9Y5F8 Cadherin
Cadherin_2
NM_018928 NP_061751 Q9Y5F7 Cadherin
Cadherin_2
NM_018929 NP_061752 Q9Y5F6 Cadherin
Cadherin_2
NM_031993 NP_114382   Cadherin
Cadherin_2
NM_032009 NP_114398   Cadherin
Cadherin_2
NM_032011 NP_114400   Cadherin
Cadherin_2
NM_032053 NP_114442   Cadherin
Cadherin_2
NM_032054 NP_114443   Cadherin
Cadherin_2
NM_032086 NP_114475   Cadherin
Cadherin_2
NM_032087 NP_114476   Cadherin
Cadherin_2
NM_032088 NP_114477 Q9Y5G5 Cadherin
Cadherin_2
NM_032089 NP_114478   Cadherin
Cadherin_2
NM_032090 NP_114479   Cadherin
Cadherin_2
NM_032091 NP_114480   Cadherin
Cadherin_2
NM_032092 NP_114481   Cadherin
Cadherin_2
NM_032094 NP_115265   Cadherin
Cadherin_2
NM_032095 NP_115266   Cadherin
Cadherin_2
NM_032096 NP_115267   Cadherin
Cadherin_2
NM_032097 NP_115268   Cadherin
Cadherin_2
NM_032098 NP_115269   Cadherin
Cadherin_2
NM_032099 NP_115270   Cadherin
Cadherin_2
NM_032100 NP_115271   Cadherin
Cadherin_2
NM_032101 NP_115272   Cadherin
Cadherin_2
NM_032402 NP_115778   Cadherin
Cadherin_2
NM_032403 NP_115779 Q9BR81  
NM_032406 NP_115782   Cadherin
Cadherin_2
NM_032407 NP_115783   Cadherin
Cadherin_2

Related Sequences

 
mRNAGenPeptSwissProt
L11371 AAA36420 Q9UN70
L11373 AAA75391 Q9UN70
AF152318 AAD43712 Q9Y5H4
AF152319 AAD43713 Q9Y5H3
AF152320 AAD43714 Q9Y5H2
AF152321 AAD43715 O60330
AF152322 AAD43716 Q9Y5H1
AF152323 AAD43717 Q9Y5H0
AF152324 AAD43718 Q9Y5G9
AF152325 AAD43719 Q9Y5G8
AF152326 AAD43720 Q9Y5G7
AF152327 AAD43721 Q9Y5G6
AF152328 AAD43722 Q9Y5G5
AF152329 AAD43723 Q9Y5G4
AF152330 AAD43724 Q9Y5G3
AF152331 AAD43725 Q9Y5G2
AF152332 AAD43726 Q9Y5G1
AF152333 AAD43727 Q9UN71
AF152334 AAD43728 Q9Y5G0
AF152335 AAD43729 Q9Y5F9
AF152336 AAD43730 Q9Y5F8
AF152337 AAD43731 Q9UN70
AF152338 AAD43732 Q9Y5F7
AF152339 AAD43733 Q9Y5F6
AF152503 AAD43764 Q9Y5H3
AF152504 AAD43765 Q9Y5H2
AF152505 AAD43766 Q9Y5H2
AF152506 AAD43767 O60330
AF152507 AAD43768 Q9Y5H4
AF152508 AAD43769 Q9Y5H1
AF152510 AAD43770 Q9Y5H0
AF152511 AAD43771 Q9Y5G9
AF152512 AAD43772 Q9Y5G8
AF152513 AAD43773 Q9Y5G7
AF152514 AAD43774 Q9Y5G6
AF152515 AAD43775 Q9Y5G5
AF152516 AAD43776 Q9Y5G4
AF152517 AAD43777 Q9Y5G3
AF152518 AAD43778 Q9Y5G2
AF152519 AAD43779 Q9Y5G1
AF152520 AAD43780 Q9UN71
AF152521 AAD43781 Q9Y5G0
AF152522 AAD43782 Q9Y5F9
AF152523 AAD43783 Q9Y5F8
AF152524 AAD43784 Q9UN70
AF152525 AAD43785 Q9Y5F7
AF152526 AAD43786 Q9Y5F6
BC004321 AAH04321 Q9BT64
BC006439 AAH06439 Q9BR81
BC019299 AAH19299 Q9UN70
BC026218 AAH26218 Q9UN70
BC027451 AAH27451 Q9BR81
BC027470 AAH27470 Q8TAJ2
BC051788 AAH51788 Q9Y5F8
BC063437 AAH63437 Q9BR81
BC093871 AAH93871 Q9Y5H1
BC093873 AAH93873 Q52LL2
BC093875 AAH93875 Q52LL2
BC093877 AAH93877 Q9Y5G0
BC093879 AAH93879 Q9Y5G0
BC101035 AAI01036 Q9Y5F7
BC101036 AAI01037 A4FU17
BC101038 AAI01039 Q9Y5F7
BC101805 AAI01806 Q9Y5G2
BC103926 AAI03927 Q9Y5G3
BC103927 AAI03928 Q9Y5G3
BC103928 AAI03929 Q3SY74
BC104926 AAI04927 Q9Y5G8
BC104950 AAI04951 Q9Y5H1
BC109240 AAI09241 A4IF48
BC112081 AAI12082 Q2M272
BC112082 AAI12083 Q2M273
BC112083 AAI12084 Q2M272
BC112084 AAI12085 Q2M273
BC112088 AAI12089 Q9UN71
BC113460 AAI13461 Q9Y5G8
BC113607 AAI13608 Q9UN71
BC115408 AAI15409 A4FUP3
BC115409 AAI15410 A4FUP4
BC132769 AAI32770 Q9Y5G4
BC133708 AAI33709 A4IF53
BC136702 AAI36703 Q9Y5G7
BC136703 AAI36704 Q9Y5G7
BC136747 AAI36748 Q9Y5G6
BC136748 AAI36749 Q9Y5G6
BC136781 AAI36782 Q9Y5H2
BC146651 AAI46652 Q9Y5G7
BC150172 AAI50173 Q9Y5G1
BC152415 AAI52416 Q9Y5G5
BC152812 AAI52813  
BC156637 AAI56638  
BC156730 AAI56731  
BC160101 AAI60101  
BC167820 AAI67820  
BC171774 AAI71774 Q9Y5H2
BC172309 AAI72309  
AY358946 AAQ89305 O60330
DQ893469 ABM84395  
DQ896354 ABM87353  
AB002325 BAA20785 Q9Y5G5
AB000896 BAA21134 Q9UN71
AB000897 BAA21135 O60330
D88796 BAA21566 O15201
D88799 BAA21569 O15203
AB011160 BAA25514 O60330
AB208927 BAD92164 Q59H32
AB208958 BAD92195 Q59H01
AB209178 BAD92415 Q59GD1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCDHGC3 NP_002579 M.musculus Pcdhgc3 93706   NP_291059 92
R.norvegicus Pcdhgc3 116782   NP_446395 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)