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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LRPPRC, leucine-rich pentatricopeptide repeat containing
Sequence ID:NM_133259
RefSeqGene ID:NG_008247
Entrez Gene ID:10128
Ensembl ID:ENSG00000138095

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
LEIGH SYNDROME, FRENCH-CANADIAN TYPE 

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 44114886 - 44121764

 Exon Info From UCSC:
NM_133259

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4827456Full LengthBC050311leucine-rich PPR-motif containing
40146316Full LengthBC130285leucine-rich PPR-motif containing
3048591IncompleteBC010282leucine-rich PPR-motif containing
4793018IncompleteBC038181leucine-rich PPR-motif containing

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_573566  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_133259 NP_573566 P42704 PPR

Related Sequences

 
mRNAGenPeptSwissProt
M92439 AAA67549 P42704
BC010282 AAH10282 P42704
BC026034 AAH26034 P42704
BC050311 AAH50311 P42704
BC130285 AAI30286 P42704
AY289212 AAP41922 P42704
AK125781 BAC86287 P42704
AK290016 BAF82705 P42704
AK299869 BAG61722 B4DSR0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LRPPRC NP_573566 R.norvegicus Lrpprc 313867   NP_001008519 76
M.musculus Lrpprc 72416 Gene Info NP_082509 75
D.melanogaster bsf 35100   NP_523596 34
A.gambiae AgaP_AGAP008770 1275629   XP_557938 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)