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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEP15, 15 kDa selenoprotein
Sequence ID:NM_004261
NM_203341
Entrez Gene ID:9403
Ensembl ID:ENSG00000183291

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 87328405 - 87379789

 Exon Info From UCSC:
NM_004261
NM_203341

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4041321Full LengthBC00529415 kDa selenoprotein
4051151Full LengthBC02169715 kDa selenoprotein
4096759Full LengthBC01635915 kDa selenoprotein

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004261 NP_004252    
NM_203341 NP_976086    

Related Sequences

 
mRNAGenPeptSwissProt
AF051894 AAC15478 O60613
AF288991 AAG31556 O60613
BC005294 AAH05294 O60613
BC016359 AAH16359 O60613
BC021697 AAH21697 O60613
AL833575 CAJ18323 O60613

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEP15 NP_004252 R.norvegicus Sep15 113922   NP_579831 94
M.musculus Sep15 93684 Gene Info NP_444332 93
A.gambiae AgaP_AGAP004986 1275812   XP_315090 51
D.melanogaster CG7484 39969   NP_649000 51
C.elegans Y76B12C.3 176999   NP_500152 42
A.thaliana AT1G05720 837079   NP_563747 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)