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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ABCF3, ATP-binding cassette, sub-family F (GCN20), member 3
Sequence ID:NM_018358
Entrez Gene ID:55324
Ensembl ID:ENSG00000161204

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q27.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 183903885 - 183911793

 Exon Info From UCSC:
NM_018358

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3028775Full LengthBC009253ATP-binding cassette, sub-family F (GCN20), member 3
5105761Full LengthBC051884ATP-binding cassette, sub-family F (GCN20), member 3
6064628Full LengthBC051754ATP-binding cassette, sub-family F (GCN20), member 3
5587596IncompleteBC035652ATP-binding cassette, sub-family F (GCN20), member 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060828  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018358 NP_060828 Q9NUQ8 ABC_tran

Related Sequences

 
mRNAGenPeptSwissProt
BC009253 AAH09253 Q9NUQ8
BC051754 AAH51754 Q9NUQ8
BC051884 AAH51884 Q9NUQ8
JF432237 ADZ15454  
AK002060 BAA92063 Q9NUQ8
AK024758 BAB14989 Q9NUQ8
AK092415 BAC03881 Q9NUQ8
AK290106 BAF82795 Q9NUQ8
AK299256 BAG61287 B4DRH5
AK299433 BAG61411 B4DRU9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABCF3 NP_060828 M.musculus Abcf3 27406 Gene Info NP_038880 97
R.norvegicus Abcf3 287982   NP_001011896 96
A.gambiae AgaP_AGAP012005 1280669   XP_320530 58
D.melanogaster CG9330 40131   NP_649129 58
C.elegans abcf-3 175873   NP_498339 52
N.crassa NCU04051 3873837   XP_957666 48
S.pombe SPBC29A3.09c 2540597   NP_595837 47
S.cerevisiae GCN20 850561   NP_116664 46
A.thaliana GCN3 842763   NP_176636 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)