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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MBD4, methyl-CpG binding domain protein 4
Sequence ID:NM_003925
Entrez Gene ID:8930
Ensembl ID:ENSG00000129071

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 129149792 - 129158852

NM_003925 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1629129149792129150420
630733129151345129151448
734883129151940129152089
8841018129152692129152826
10191093129152904129152978
10941959129155285129156150
19602190129156562129156792
21912470129158572129158851

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3534047Full LengthBC011752methyl-CpG binding domain protein 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003916  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003925 NP_003916 O95243 MBD

Related Sequences

 
mRNAGenPeptSwissProt
AF072250 AAC68879 O95243
AF114784 AAD22195 O95243
BC011752 AAH11752 O95243
AF532602 AAP97338 O95243
JF432222 ADZ15439  
AK303013 BAG64144 B4DZN2
CR450305 CAG29301 O95243
AM180876 CAJ55826 Q2MD36

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MBD4 NP_003916 M.musculus Mbd4 17193 Gene Info NP_034904 69
R.norvegicus Mbd4 680915   XP_001059437 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)