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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATL3, atlastin GTPase 3
Sequence ID:NM_015459
Entrez Gene ID:25923
Ensembl ID:ENSG00000184743

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 63396601 - 63438807

 Exon Info From UCSC:
NM_015459

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5952471Full LengthBC077727atlastin GTPase 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056274  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015459 NP_056274 Q6DD88 GBP

Related Sequences

 
mRNAGenPeptSwissProt
BC077727 AAH77727 Q6DD88
AK023383 BAB14552 Q6DD88
AK097588 BAC05111 Q6DD88
AK301910 BAG63336 B4DXC4
AL117600 CAB56010 Q6DD88

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATL3 NP_056274 M.musculus Atl3 109168 Gene Info NP_666203 95
R.norvegicus Atl3 309187   NP_001037706 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)