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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PSMC1, proteasome (prosome, macropain) 26S subunit, ATPase, 1
Sequence ID:NM_002802
Entrez Gene ID:5700
Ensembl ID:ENSG00000100764

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q32.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 90725502 - 90738751

 Exon Info From UCSC:
NM_002802

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822718Full LengthBC000512proteasome (prosome, macropain) 26S subunit, ATPase, 1
4133348Full LengthBC016368proteasome (prosome, macropain) 26S subunit, ATPase, 1
5264945Full LengthBC067741proteasome (prosome, macropain) 26S subunit, ATPase, 1
5456334Full LengthBC073818proteasome (prosome, macropain) 26S subunit, ATPase, 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002793  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002802 NP_002793 Q53XL8
P62191
AAA

Related Sequences

 
mRNAGenPeptSwissProt
L02426 AAA35484 P62191
BC000512 AAH00512 Q53XL8
P62191
BC016368 AAH16368 P62191
BC067741 AAH67741 Q6NW36
BC073818 AAH73818 Q53XL8
P62191
BT009826 AAP88828 Q53XL8
P62191
DQ891703 ABM82629  
DQ894881 ABM85807  
AK222668 BAD96388 Q53HB3
AK313325 BAG36130 Q53XL8
AK299121 BAG61175 B4DR63
AB451311 BAG70125 Q53XL8
AB451441 BAG70255 Q53XL8
CR457044 CAG33325 Q53XL8
P62191

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMC1 NP_002793 M.musculus Psmc1 19179 Gene Info NP_032973 100
R.norvegicus Psmc1 117263   NP_476464 100
A.gambiae AgaP_AGAP003215 1273890   XP_312923 92
A.gambiae AgaP_AGAP003216 1273891   XP_312924 92
D.melanogaster Pros26.4 42828   NP_524469 92
C.elegans rpt-2 178988   NP_504558 84
A.thaliana AT2G20140 816533   NP_179604 78
A.thaliana RPT2a 829025   NP_194633 77
P.falciparum PF10_0081 810239   XP_001347366 76
S.pombe rpt2 2540939   NP_595480 74
S.cerevisiae RPT2 851557   NP_010277 72
N.crassa NCU11271 3877722   XP_961590 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)