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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNX6, sorting nexin 6
Sequence ID:NM_152233
NM_021249
Entrez Gene ID:58533
Ensembl ID:ENSG00000129515

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 35031689 - 35072596

 Exon Info From UCSC:
NM_152233
NM_021249

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3354467Full LengthBC001798sorting nexin 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067072  NP_689419  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021249 NP_067072   PX
NM_152233 NP_689419   PX
BAR

Related Sequences

 
mRNAGenPeptSwissProt
U83194 AAD24202 Q9UNH7
AF121856 AAD27829 Q9UNH7
BC001798 AAH01798 C0H5W9
AF109364 AAQ13512 Q5QTQ6
JF432480 ADZ15697  
AK292250 BAF84939 A8K885
AK021456 BAG51034 Q5QTQ6
AK296213 BAG58939 B4DJS7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNX6 NP_689419 M.musculus Snx6 72183 Gene Info NP_081274 100
R.norvegicus Snx6 362738   NP_001102181 100
A.gambiae AgaP_AGAP004487 1274634   XP_313785 59
D.melanogaster Snx6 34126   NP_609199 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)