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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NID1, Nidogen 1
Sequence ID:NM_002508
Entrez Gene ID:4811
Ensembl ID:ENSG00000116962

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q43Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 236140235 - 236228378

 Exon Info From UCSC:
NM_002508

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5271590Full LengthBC045606nidogen 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002499  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002508 NP_002499 P14543 EGF
Ldl_recept_b
Thyroglobulin_1
NIDO
G2F
EGF_CA

Related Sequences

 
mRNAGenPeptSwissProt
M27445 AAA57261 P14543
M30269 AAA59932 P14543
BC045606 AAH45606 P14543
AB209448 BAD92685 P14543
AK297234 BAG59717 B4DM05

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NID1 NP_002499 R.norvegicus Nid1 25494   XP_213954 85
M.musculus Nid1 18073 Gene Info NP_035047 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)