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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPS3A, Ribosomal protein S3A
Sequence ID:NM_001267699
NM_001006
Entrez Gene ID:6189
Ensembl ID:ENSG00000145425

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q31.2-q31.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 152020781 - 152025788

Transcript StartTranscript EndChromosomal Start Chromosomal End
1113152020753152020865
114217152021636152021739
218405152022126152022313
406614152024022152024230
615724152025328152025437
725903152025623152025801

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2906117Full LengthBC004981ribosomal protein S3A
3350750Full LengthBC000204ribosomal protein S3A
3544072Full LengthBC001708ribosomal protein S3A
3922810Full LengthBC017123ribosomal protein S3A
3927639Full LengthBC009219ribosomal protein S3A
4079651Full LengthBC006298ribosomal protein S3A
4308955Full LengthBC009404ribosomal protein S3A
4826149Full LengthBC066926ribosomal protein S3A
5020581Full LengthBC019072ribosomal protein S3A
5020904Full LengthBC030161ribosomal protein S3A
5809691Full LengthBC070211ribosomal protein S3A
6285242Full LengthBC071916ribosomal protein S3A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000997  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001006 NP_000997 P61247 Ribosomal_S3Ae
NM_001267699 NP_001254628    

Related Sequences

 
mRNAGenPeptSwissProt
L13802 AAA35682 P61247
M84711 AAA58487 P61247
M77234 AAA60290 P61247
BC000204 AAH00204 P61247
BC001708 AAH01708 P61247
BC004981 AAH04981 P61247
BC006298 AAH06298 P61247
BC009219 AAH09219 P61247
BC009404 AAH09404 P61247
BC017123 AAH17123 P61247
BC019072 AAH19072 P61247
BC030161 AAH30161 P61247
BC066926 AAH66926 Q6NXR8
BC070211 AAH70211 P61247
BC071916 AAH71916 P61247
DQ891143 ABM82069  
DQ894322 ABM85248  
D28374 BAA05740  
AK291075 BAF83764 A8K4W0
AK311788 BAG34731 P61247
AK296121 BAH12261 B7Z3M5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS3A NP_000997 M.musculus Rps3a 20091 Gene Info NP_058655 99
M.musculus Gm10119 100043780 Gene Info XP_001480995 99
R.norvegicus Rps3a 29288   NP_058849 99
M.musculus Gm9000 668144 Gene Info XP_999639 98
A.thaliana AT4G34670 829619   NP_195193 70
A.gambiae RS3A_ANOGA 1274189   XP_313275 69
D.melanogaster RpS3A 43768   NP_524618 69
A.thaliana AT3G04840 819644   NP_187135 68
C.elegans rps-1 175584   NP_497910 65
N.crassa NCU01452 3872112   XP_955974 64
S.cerevisiae RPS1B 854939   NP_013648 61
S.pombe rps102 2541737   NP_593116 61
S.pombe rps101 2542817   NP_592828 61
S.cerevisiae RPS1A 851162   NP_013546 60
P.falciparum PFC1020c 814544   XP_001351300 59

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)