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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNRPD3, small nuclear ribonucleoprotein D3 polypeptide 18kDa
Sequence ID:NM_004175
Entrez Gene ID:6634
Ensembl ID:ENSG00000100028

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 24953642 - 24967945

NM_004175 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14222495161724952038
4235662495362424953767
5677592496395124964143
76013852496788324968508

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822042Full LengthBC000457small nuclear ribonucleoprotein D3 polypeptide 18kDa
2822042Full LengthBC003150small nuclear ribonucleoprotein D3 polypeptide 18kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004166  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004175 NP_004166 P62318 LSM

Related Sequences

 
mRNAGenPeptSwissProt
U15009 AAA57034 P62318
BC000457 AAH00457 P62318
BC003150 AAH03150 P62318
AK296173 BAG58909 B4DJP7
AB451249 BAG70063 P62318
AB451373 BAG70187 P62318
CR456583 CAG30469 P62318
CU013182 CAK54613  
CU013470 CAK54912  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRPD3 NP_004166 M.musculus Snrpd3 67332 Gene Info NP_080371 100
A.thaliana SmD3 843963   NP_177757 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta