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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPLP1, Ribosomal protein, large, P1
Sequence ID:NM_001003
NM_213725
Entrez Gene ID:6176
Ensembl ID:ENSG00000137818

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 69745160 - 69747885

 Exon Info From UCSC:
NM_001003
NM_213725

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2900846Full LengthBC003369ribosomal protein, large, P1
3343021Full LengthBC007590ribosomal protein, large, P1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_998890  NP_000994  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001003 NP_000994 P05386 Ribosomal_60s
NM_213725 NP_998890   Ribosomal_60s

Related Sequences

 
mRNAGenPeptSwissProt
M17886 AAA36471 P05386
BC003369 AAH03369 P05386
BC007590 AAH07590 P05386
AY303789 AAP68820 Q7Z612
D28366 BAA05732  
CR450339 CAG29335 Q6ICQ4
CR542209 CAG47005 Q6FG99

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPLP1 NP_000994 R.norvegicus Rplp1 140661   NP_001007605 98
R.norvegicus LOC100360522 100360522   XP_002728498 98
M.musculus Rplp1 56040 Gene Info NP_061341 97
A.gambiae AgaP_AGAP007740 1278225   XP_317780 66
C.elegans rla-1 171766   NP_740801 66
D.melanogaster RpLP1 33214   NP_476630 66
N.crassa NCU08960 3876822   XP_960684 63
S.pombe rpp101 2543217   NP_593883 60
A.thaliana AT4G00810 828004   NP_567190 59
A.thaliana AT5G47700 834821   NP_001078728 58
A.thaliana AT1G01100 839410   NP_849569 58
S.pombe rpp102 2540299   NP_596671 57
S.pombe rpp103 2539598   NP_588562 56
S.cerevisiae RPP1A 851478   NP_010202 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)