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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HMGN1, high mobility group nucleosome binding domain 1
Sequence ID:NM_004965
Entrez Gene ID:3150
Ensembl ID:ENSG00000205581

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 40714241 - 40718454

NM_004965 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
168544071424640715084
8559834071707140717199
98410314072021740720264
103210614072034740720376
106210944072047040720502
109513134072082840721046

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3510312Full LengthBC000075high-mobility group nucleosome binding domain 1
3855939Full LengthBC106080high-mobility group nucleosome binding domain 1
4104558Full LengthBC023984high-mobility group nucleosome binding domain 1
5549431Full LengthBC071643high-mobility group nucleosome binding domain 1
6166317Full LengthBC072672high-mobility group nucleosome binding domain 1
6450636Full LengthBC070153high-mobility group nucleosome binding domain 1
6495117Full LengthBC107741high-mobility group nucleosome binding domain 1
6495327Full LengthBC070154high-mobility group nucleosome binding domain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004956  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004965 NP_004956 P05114 HMG14_17

Related Sequences

 
mRNAGenPeptSwissProt
J02621 AAA52676 P05114
BC000075 AAH00075 P05114
BC023984 AAH23984 P05114
BC070153 AAH70153 P05114
BC070154 AAH70154 Q6NSG7
BC071643 AAH71643 Q6NSG7
BC072672 AAH72672 Q6NSG7
BC106080 AAI06081 P05114
BC107741 AAI07742 Q3B790
BT007337 AAP36001 P05114
DQ891741 ABM82667  
DQ894919 ABM85845  
AK056033 BAB71078 Q96N32
AB209245 BAD92482  

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta