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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. MAP1LC3B, Microtubule-associated protein 1 light chain 3 beta
Sequence ID:NM_022818
RefSeqGene ID:NG_029030
Entrez Gene ID:81631
Ensembl ID:ENSG00000140941

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q24.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 87425941 - 87438380

NM_022818 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12738742580087426072
2743298743242087432475
3304368743578087435886
43722878743652887438378

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3623259Full LengthBC018634microtubule-associated protein 1 light chain 3 beta
4828857Full LengthBC045759microtubule-associated protein 1 light chain 3 beta
5271912Full LengthBC041874microtubule-associated protein 1 light chain 3 beta
5276841Full LengthBC067797microtubule-associated protein 1 light chain 3 beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_073729  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022818 NP_073729 Q658J6
Q9GZQ8
MAP1_LC3

Related Sequences

 
mRNAGenPeptSwissProt
AF183417 AAG09686 Q658J6
Q9GZQ8
AF303888 AAG23182 Q658J6
Q9GZQ8
BC018634 AAH18634 Q658J6
Q9GZQ8
BC041874 AAH41874 Q658J6
Q9GZQ8
BC045759 AAH45759 Q49A36
BC067797 AAH67797 Q9GZQ8
AF087871 AAM10499 Q658J6
Q9GZQ8
DQ893152 ABM84078  
DQ896448 ABM87447  
JN663879 AEZ06292 H6UMI0
AK025556 BAB15169 Q658J6
Q9GZQ8
AK290956 BAF83645 Q658J6
AL834298 CAD38970 Q658J6
Q9GZQ8
AM393561 CAL38438  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MAP1LC3B NP_073729 R.norvegicus Map1lc3b 64862   NP_074058 96
M.musculus Map1lc3b 67443 Gene Info NP_080436 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)