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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SFPQ, Splicing factor proline/glutamine-rich
Sequence ID:NM_005066
Entrez Gene ID:6421
Ensembl ID:ENSG00000116560

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 35656132 - 35658742

NM_005066 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
39943564920235650193
99511163565260135652722
111711653565280335652851
116612833565357335653690
128413683565460335654687
136915653565478635654982
156616613565609835656193
166219633565629435656595
196421523565694135657129
215330733565782235658742

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5262885Full LengthBC051192splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)
3139130IncompleteBC004534splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)
3960188IncompleteBC027708splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005057  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005066 NP_005057 P23246 RRM_1
NOPS

Related Sequences

 
mRNAGenPeptSwissProt
BC004534 AAH04534 Q9BSV4
BC027708 AAH27708 Q6PIX2
BC051192 AAH51192 Q86VG2
X16850 CAA34747 P23246
X70944 CAA50283 P23246

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SFPQ NP_005057 M.musculus Sfpq 71514 Gene Info NP_076092 96
R.norvegicus Sfpq 252855   NP_001020442 96
A.gambiae AgaP_AGAP003794 1271533   XP_310351 44
D.melanogaster nonA 32603   NP_523367 42
D.melanogaster nonA-l 42026   NP_536740 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta