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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CD27, CD27 molecule
Sequence ID:NM_001242
RefSeqGene ID:NG_031995
Entrez Gene ID:939
Ensembl ID:ENSG00000139193

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 6554032 - 6560558

NM_001242 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
134765540506554396
34847965545896554720
48065965593386559517
66074965597066559795
75086965600606560179
870131965604336560882

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4575359Full LengthBC012160CD27 molecule

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001233  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001242 NP_001233 P26842 TNFR_c6

Related Sequences

 
mRNAGenPeptSwissProt
M63928 AAA58411 P26842
BC012160 AAH12160 P26842
DQ892296 ABM83222  
EU176659 ABW03460  
AK315732 BAG38087 P26842

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CD27 NP_001233 R.norvegicus Cd27 500318   NP_001019506 69
M.musculus Cd27 21940 Gene Info NP_001028298 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)