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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BSDC1, BSD domain containing 1
Sequence ID:NM_001143888
NM_018045
NM_001143889
NM_001143890
Entrez Gene ID:55108
Ensembl ID:ENSG00000160058

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 32830706 - 32860032

 Exon Info From UCSC:
NM_001143888
NM_018045
NM_001143889
NM_001143890

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4794111Full LengthBC026322BSD domain containing 1
4812029Full LengthBC028381BSD domain containing 1
4181070IncompleteBC010573BSD domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060515  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001143888 NP_001137360    
NM_001143889 NP_001137361    
NM_001143890 NP_001137362    
NM_018045 NP_060515 Q9NW68 BSD

Related Sequences

 
mRNAGenPeptSwissProt
BC026322 AAH26322 Q9NW68
BC028381 AAH28381 Q9NW68
AY358230 AAQ88597 Q9NW68
EU832565 ACE86967  
EU832485 ACE87657  
AK001138 BAA91517 Q9NW68
AK021440 BAB13825 Q9NW68
AK293454 BAG56950 B4DE39
AK297352 BAG59801 B4DM89
AK297604 BAG59989 Q9NW68
AK300231 BAG61999 Q9NW68
AK300306 BAG62059 Q9NW68
AK304477 BAG65290 Q9NW68
AK316172 BAH14543 B7ZA57
BX641056 CAE46029 Q9NW68
CR457252 CAG33533 Q9NW68
CR749228 CAH18084 Q9NW68

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BSDC1 NP_060515 M.musculus Bsdc1 100383 Gene Info NP_598650 93
R.norvegicus Bsdc1 297890   NP_001100106 91
A.gambiae AgaP_AGAP011115 1270810   XP_309531 29
A.thaliana AT1G03350 838679   NP_563683 26