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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL8A2, collagen, type VIII, alpha 2
Sequence ID:NM_005202
RefSeqGene ID:NG_016245
Entrez Gene ID:1296
Ensembl ID:ENSG00000171812

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CORNEAL DYSTROPHY, FUCHS ENDOTHELIAL, 1 
CORNEAL DYSTROPHY, HEREDITARY POLYMORPHOUSPOSTERIORVSX1
CORNEALDYSTROPHY POLYMORPHOUS POSTERIOR, 2 

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p34.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 36560845 - 36565850

NM_005202 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
442473656084436565087
424844473656565036565849

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40007335Full LengthBC096296collagen, type VIII, alpha 2
40007334IncompleteBC099645collagen, type VIII, alpha 2
40007336IncompleteBC096297collagen, type VIII, alpha 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005193  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005202 NP_005193 P25067 C1q
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC096295 AAH96295 Q4VAQ1
BC096296 AAH96296 Q4VAQ0
BC096297 AAH96297 Q4VAP9
BC099645 AAH99645 Q4VAP9
AK074129 BAB84955 P25067

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL8A2 NP_005193 M.musculus Col8a2 329941 Gene Info NP_955767 95
R.norvegicus Col8a2 313592   XP_233542 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)