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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. AGFG1, ArfGAP with FG repeats 1
Sequence ID:NM_001135187
NM_004504
NM_001135188
NM_001135189
Entrez Gene ID:3267
Ensembl ID:ENSG00000173744

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q36.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 228336867 - 228419275

 Exon Info From UCSC:
NM_001135187
NM_004504
NM_001135188
NM_001135189

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4836885Full LengthBC030592ArfGAP with FG repeats 1
40006445Full LengthBC096272ArfGAP with FG repeats 1
40006446Full LengthBC096273ArfGAP with FG repeats 1
40006448Full LengthBC096274ArfGAP with FG repeats 1
40006449Full LengthBC096275ArfGAP with FG repeats 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004495  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001135187 NP_001128659    
NM_001135188 NP_001128660    
NM_001135189 NP_001128661    
NM_004504 NP_004495 P52594 ArfGap

Related Sequences

 
mRNAGenPeptSwissProt
BC030592 AAH30592 P52594
BC096272 AAH96272 P52594
BC096273 AAH96273 P52594
BC096274 AAH96274 P52594
BC096275 AAH96275 P52594
AK097451 BAG53473 B3KUL1
AK295030 BAG58086 B4DHC5
X89478 CAA61667 P52594

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens AGFG1 NP_001128659 M.musculus Agfg1 15463 Gene Info NP_034602 97
R.norvegicus Agfg1 363266   NP_001129068 96
D.melanogaster drongo 33263   NP_477239 36
A.gambiae AgaP_AGAP010189 1279609   XP_319366 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)