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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PSMB1, proteasome (prosome, macropain) subunit, beta type, 1
Sequence ID:NM_002793
Entrez Gene ID:5689
Ensembl ID:ENSG00000008018

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q27Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 170844309 - 170862330

NM_002793 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
23311170844204170844492
312418170846321170846427
419548170852688170852817
549630170855190170855271
631738170858093170858200
739938170862217170862416

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822268Full LengthBC000508proteasome (prosome, macropain) subunit, beta type, 1
4281426Full LengthBC020807proteasome (prosome, macropain) subunit, beta type, 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002784  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_002793 NP_002784 P20618 EC 3.4.25.1 Proteasome

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC000508 AAH00508 P20618 EC 3.4.25.1
BC020807 AAH20807 P20618 EC 3.4.25.1
BT019720 AAV38525 P20618 EC 3.4.25.1
EU176672 ABW03473    
EU176329 ABW03780    
D00761 BAA00658 P20618 EC 3.4.25.1
AB209078 BAD92315 Q59GN1  
AK223193 BAD96913 Q53FT8  
AB451312 BAG70126 P20618 EC 3.4.25.1
AB451442 BAG70256 P20618 EC 3.4.25.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMB1 NP_002784 M.musculus Psmb1 19170 Gene Info NP_035315 94
R.norvegicus Psmb1 94198   NP_446042 92
D.melanogaster Pros26 39855   NP_524115 53
A.gambiae AgaP_AGAP004991 1275817   XP_315096 52
A.thaliana PBF1 825253   NP_001190146 50
N.crassa NCU09366 3879925   XP_963776 50
S.cerevisiae PRE7 852239   NP_009512 49
S.pombe pam1 2542062   NP_594729 48
C.elegans pbs-6 176161   NP_498806 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)