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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GATA5, GATA binding protein 5
Sequence ID:NM_080473
Entrez Gene ID:140628
Ensembl ID:ENSG00000130700

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 61038552 - 61051026

NM_080473 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
114956103855261040046
149616206104039561040519
162117086104088961040976
170918346104148161041606
183520106104845861048633
201125546105005461050597
255525956105098561051025

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40125907Full LengthBC117356GATA binding protein 5
40125909Full LengthBC117358GATA binding protein 5
6464800IncompleteBC047790GATA binding protein 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_536721  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_080473 NP_536721 Q9BWX5 GATA
GATA-N

Related Sequences

 
mRNAGenPeptSwissProt
BC047790 AAH47790 Q86VU4
BC117356 AAI17357 Q9BWX5
BC117358 AAI17359 Q9BWX5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GATA5 NP_536721 R.norvegicus Gata5 499951   NP_001019487 78
M.musculus Gata5 14464 Gene Info NP_032119 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)