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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLCNKB, chloride channel, voltage-sensitive Kb
Sequence ID:XM_003960900
NM_000085
NM_001165945
RefSeqGene ID:NG_013079
Entrez Gene ID:1188
Ensembl ID:ENSG00000184908

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
BARTTER SYNDROME, TYPE 3 
BARTTER SYNDROME, TYPE 4B, DIGENICCLCNKA

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 16375283 - 16383802

 Exon Info From UCSC:
NM_000085
NM_001165945

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4608625Full LengthBC020873chloride channel Kb

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000076  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000085 NP_000076 P51801 CBS
Voltage_CLC
NM_001165945 NP_001159417    

Related Sequences

 
mRNAGenPeptSwissProt
S80315 AAB35898 P51801
BC020873 AAH20873 Q8WW53
AK292335 BAF85024 A8K8H0
AK098217 BAG53595 B3KUY3
Z30644 CAA83121 P51801
XM_003960900 XP_003960949  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLCNKB NP_000076 R.norvegicus Clcnka 79425   NP_445779 81
M.musculus Clcnka 12733 Gene Info NP_077723 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)