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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COX6C, cytochrome c oxidase subunit VIc
Sequence ID:NM_004374
Entrez Gene ID:1345
Ensembl ID:ENSG00000164919

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q22.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 100890377 - 100892437

NM_004374 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1271100890222100890492
272400100899717100899845
401545100904135100904279
546921100905866100906241

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3350637Full LengthBC000187cytochrome c oxidase subunit VIc

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004365  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004374 NP_004365 P09669 COX6C

Related Sequences

 
mRNAGenPeptSwissProt
BC000187 AAH00187 P09669
BT007007 AAP35653 P09669
DQ896797 ABM87796  
DQ890542 ABM92159  
EU831617 ACE87217  
AK311791 BAG34734 P09669
X13238 CAA31624 P09669

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COX6C NP_004365 M.musculus Cox6c 12864 Gene Info NP_444301 77
R.norvegicus Cox6c 54322   NP_062233 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)