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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. UBXN1, UBX domain protein 1
Sequence ID:NM_015853
Entrez Gene ID:51035
Ensembl ID:ENSG00000162191

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 62443972 - 62446545

NM_015853 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
205246244397262444476
5256416244498962445105
6426936244525262445303
6948856244539862445589
8869556244581062445879
95610626244596662446072
106311166244616162446214
111713076244633662446526

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2900493Full LengthBC000902UBX domain protein 1
3051213Full LengthBC001372UBX domain protein 1
6065505Full LengthBC040129UBX domain protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056937  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015853 NP_056937   UBA
UBX

Related Sequences

 
mRNAGenPeptSwissProt
M68864 AAA36396 Q04323
BC000902 AAH00902 Q04323
BC001372 AAH01372 Q04323
BC032689 AAH32689 Q05BV2
BC040129 AAH40129 Q04323
GQ129328 ACT64462  
HQ448734 ADQ33212  
AK054832 BAG51430 Q05BV2
AK297856 BAG60188 B4DNC6
AK300542 BAG62250 B4DU88
AK303471 BAG64510 B4E0P8
AK316012 BAH14383 B4DNC6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens UBXN1 NP_056937 M.musculus Ubxn1 225896 Gene Info NP_666205 92
R.norvegicus Ubxn1 293719   NP_001030001 91
D.melanogaster CG8209 38888   NP_648167 43
A.gambiae AgaP_AGAP009841 1279259   XP_318954 41
C.elegans ubxn-1 171804   NP_490978 34
N.crassa NCU08955 3876830   XP_960679 29
S.pombe SPAC17C9.11c 2542167   NP_594595 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)