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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HLA-DMB, major histocompatibility complex, class II, DM beta
Sequence ID:NM_002118
Entrez Gene ID:3109
Ensembl ID:ENSG00000242574

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 32902735 - 32905037

NM_002118 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
163743290240532902763
3754103290311832903153
4115273290331232903428
5288123290494832905232
81310943290646032906741
109514123290852932908846

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4341639Full LengthBC027175major histocompatibility complex, class II, DM beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002109  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002118 NP_002109 P28068 ig
MHC_II_beta
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
U15085 AAB60387 P28068
BC027175 AAH27175 P28068
AY645722 AAV97947 P28068
DQ891141 ABM82067  
DQ894320 ABM85246  
AB209577 BAD92814 Q59F83
AB362554 BAF81534 A8CGH7
AB362555 BAF81535 A8CGH8
AB362556 BAF81536 A8CGH9
AK295872 BAG58670 B4DJ08
AK315979 BAH14350 E9PD01
Z23139 CAA80670 P28068
CR407606 CAG28534 Q6LEU6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HLA-DMB NP_002109 M.musculus H2-DMb2 15000 Gene Info NP_034518 74
M.musculus H2-DMb1 14999 Gene Info NP_034517 73
R.norvegicus RT1-DMb 294273   NP_942035 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)