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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CAPN2, calpain 2, (m/II) large subunit
Sequence ID:NM_001146068
NM_001748
Entrez Gene ID:824
Ensembl ID:ENSG00000162909

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q41-q42Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 223900253 - 223963545

 Exon Info From UCSC:
NM_001146068
NM_001748

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5090865Full LengthBC021303calpain 2, (m/II) large subunit
3637421IncompleteBC007686calpain 2, (m/II) large subunit
3833113IncompleteBC011828calpain 2, (m/II) large subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001739  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001146068 NP_001139540    
NM_001748 NP_001739   efhand
Peptidase_C2
Calpain_III

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M23254 AAA35645 P17655 EC 3.4.22.53
AF261089 AAF99682 P17655 EC 3.4.22.53
BC007686 AAH07686 P17655 EC 3.4.22.53
BC011828 AAH11828 P17655 EC 3.4.22.53
BC021303 AAH21303 P17655 EC 3.4.22.53
DQ893312 ABM84238    
DQ893620 ABM84546    
EU176804 ABW03605    
AK124751 BAC85936 Q6ZVC6  
AB209855 BAD93092 Q59EF6  
AK315179 BAG37620 B2RCM3  
AK097247 BAG53441 B3KUH9  
AK297800 BAG60139 B4DN77  
AK303952 BAG64879 B4E1R7  
AK316211 BAH14582 P17655 EC 3.4.22.53

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CAPN2 NP_001739 R.norvegicus Capn2 29154   NP_058812 94
M.musculus Capn2 12334 Gene Info NP_033924 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta