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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ZMAT2, Zinc finger, matrin-type 2
Sequence ID:NM_144723
Entrez Gene ID:153527
Ensembl ID:ENSG00000146007

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 140080031 - 140086239

NM_144723 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
132140080031140080062
33126140080403140080496
127250140081590140081713
251324140083502140083575
325470140084010140084155
4711512140085197140086238

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4773709Full LengthBC056668zinc finger, matrin type 2

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_144723 NP_653324 Q96NC0  

Related Sequences

 
mRNAGenPeptSwissProt
BC056668 AAH56668 Q96NC0
HQ447705 ADQ32190  
AK055683 BAB70983 Q96NC0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ZMAT2 NP_653324 M.musculus Zmat2 66492 Gene Info NP_079870 100
R.norvegicus Zmat2 679898   NP_001129054 99
D.melanogaster CG11586 38520   NP_647881 71
A.gambiae AgaP_AGAP006245 3290133   XP_556948 64
A.thaliana AT3G05760 819745   NP_566257 54
C.elegans ZK686.4 176090   NP_498692 50
N.crassa NCU07265 3878258   XP_962119 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)