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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CBX5, chromobox homolog 5
Sequence ID:NM_001127321
NM_001127322
NM_012117
Entrez Gene ID:23468
Ensembl ID:ENSG00000094916

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 54634785 - 54635502

 Exon Info From UCSC:
NM_001127321
NM_001127322
NM_012117

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3448801Full LengthBC006821chromobox homolog 5 (HP1 alpha homolog, Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036249  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001127321 NP_001120793    
NM_001127322 NP_001120794    
NM_012117 NP_036249 P45973 Chromo
Chromo_shadow

Related Sequences

 
mRNAGenPeptSwissProt
L07515 AAA72327 P45973
S62077 AAB26994 P45973
U26311 AAC50553 P45973
BC006821 AAH06821 P45973
EU446624 ABZ92153  
EU446784 ABZ92313  
AK313506 BAG36286 P45973
CR457418 CAG33699 Q6I9T7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CBX5 NP_001120793 R.norvegicus Cbx5 300266   NP_001100267 98
M.musculus Cbx5 12419 Gene Info NP_031652 98
A.gambiae AgaP_AGAP009444 1269242   XP_307857 52
D.melanogaster Su(var)205 34119   NP_476755 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)