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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TYW3, tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)
Sequence ID:NM_001162916
NM_138467
NR_027962
Entrez Gene ID:127253
Ensembl ID:ENSG00000162623

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, retina, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p31.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 75198839 - 75231308

 Exon Info From UCSC:
NM_001162916
NM_138467

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3931600Full LengthBC071765tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)
3542597IncompleteBC009514tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)
5194639IncompleteBC032341chromosome 1 open reading frame 171

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_612476  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001162916 NP_001156388    
NM_138467 NP_612476 Q6IPR3 DUF207

Related Sequences

 
mRNAGenPeptSwissProt
BC009514 AAH09514 Q96GE7
BC071765 AAH71765 Q6IPR3
AK098237 BAC05267 Q6IPR3
AK294264 BAG57557 B4DFU6
AK299849 BAG61711 Q6IPR3
BX647591 CAI46106 Q6IPR3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TYW3 NP_612476 M.musculus Tyw3 209584 Gene Info NP_766062 71
R.norvegicus Tyw3 499731   XP_575065 70
S.pombe SPAC25B8.15c 2542730   NP_594475 35
S.cerevisiae TYW3 852832   NP_011465 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)