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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NHLRC1, NHL repeat containing 1
Sequence ID:NM_198586
RefSeqGene ID:NG_016750
Entrez Gene ID:378884
Ensembl ID:ENSG00000187566

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
EPILEPSY, PROGRESSIVE MYOCLONIC 2A (LAFORA)EPM2A

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 18121524 - 18122851

NM_198586 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
121341812071718122850

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40004980Full LengthBC103888NHL repeat containing 1
40004983Full LengthBC103889NHL repeat containing 1
40004985Full LengthBC103890NHL repeat containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_940988  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_198586 NP_940988 Q6VVB1 NHL

Related Sequences

 
mRNAGenPeptSwissProt
BC103888 AAI03889 Q6VVB1
BC103889 AAI03890 Q6VVB1
BC103890 AAI03891 Q6VVB1
AY324850 AAQ19671 Q6VVB1
BK001510 DAA01954 Q6VVB1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NHLRC1 NP_940988 R.norvegicus Nhlrc1 364682   NP_954706 85
M.musculus Nhlrc1 105193 Gene Info NP_780549 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)